Wrapper function of all presented results

Usage

gatherResults(dat, b1.upper = 1, b0.upper = 0)

Arguments

dat: The log2-transformed intensity matrix where rows are precursors and columns are samples.
b1.upper: Upper bound for beta_1 when fitting the detection probability curve. Typically 1.
b0.upper: Upper bound for beta_0 when fitting an empirical regression spline.

Value

List of results including the logistic-spline fits, the deviance partitioning plot, the capped logit-linear fit and the fitted detection probability curve assuming normal observed intensities.

Examples

## See the vignettes.