Detection probability curve for label free shotgun proteomics data assuming observed normal intensities

Detection probability curve for label free shotgun proteomics data assuming observed normal intensities

Usage

dpc(y, maxit = 100, eps = 1e-04, b1.upper = 1)

Arguments

y

Log2-transformed precursor-level intensities with precursors on the rows and samples on the columns.

maxit

Maximum number of iterations.

eps

Convergence tolerance.

b1.upper

Upper bound for beta_1. Typically 1.

Value

Fitted parameters and the fitting history.

Examples

## See the vignettes.