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ahba
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Processed Allen Human Brain Atlas (AHBA) data |
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brainclass()
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Transcriptional-data-guided fMRI network classification |
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digsee
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Processed DiGSeE scores of relevance to schizophrenia of each gene set
signature |
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filterGeneExpr()
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Filter gene expression data by average expression |
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filterGeneSets()
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Filter gene sets by size and presence of each gene in the reference gene
expression data set |
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getCVfolds()
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Get indices of observations assigned to each fold for repeated k-fold
cross-validation |
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getEdgeLabel()
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Obtain labels of edges in a network |
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getGeneSetEdgeGroup()
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Construct gene set edge groups for a gene set collection (GSC) of interest |
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getROC()
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Obtain the receiver operating characteristic (ROC) curve |
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getSelectedGroup()
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Identify feature groups where all fitted coefficients are non-zero. |
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gscv7.0
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Gene set collections downloaded from MSigDB v7.0 |
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jaccard()
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Calculate Jaccard Index of two sets |
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posthoc.edge()
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Obtain the edgewise post-hoc interpretability metrics |